Come on, we need your help :help:
We have 30 active folders in our community and 49 registered folders not folding. :(
If you've had problems in the past try the newer console versions run as a service (5.03 or the new 5.04 beta). I can play BF2 with it running and don't notice any difference but it's easy to stop it using BB's script service stop/start thread (http://forum.deadmen.co.uk/index.php?showtopic=10275&hl=) if you feel you need to.
Install it and try it and if you have problems let us know about them and check out this forum Folding Forum (http://forum.folding-community.org/) and you may find the answer you need.